No universal thresholds are supplied. A gate records the analyst's prespecified requirements.
Usage
som_gate(
max_topographic_error = NULL,
max_empty_unit_rate = NULL,
min_median_ari = NULL,
min_median_ami = NULL,
min_pairwise_coverage = NULL,
min_cluster_jaccard = NULL,
min_consensus_coverage = NULL,
min_replicated_coverage = NULL,
min_membership_support = NULL,
max_assignment_entropy = NULL,
min_cross_model_ari = NULL,
min_cross_model_methods = NULL,
min_success_rate = NULL
)Arguments
- max_topographic_error
Optional maximum median topographic error.
- max_empty_unit_rate
Optional maximum median empty-unit rate.
- min_median_ari
Optional minimum median pairwise ARI.
- min_median_ami
Optional minimum median pairwise AMI.
- min_pairwise_coverage
Optional minimum median proportion of samples jointly assigned in pairwise partition comparisons.
- min_cluster_jaccard
Optional minimum across cluster-level median Jaccard values.
- min_consensus_coverage
Optional minimum proportion of samples with an identifiable consensus label.
- min_replicated_coverage
Optional minimum proportion of samples assigned by at least two partitions, for which support and entropy are estimable.
- min_membership_support
Optional minimum median sample membership support.
- max_assignment_entropy
Optional maximum median normalized assignment entropy.
- min_cross_model_ari
Optional minimum of the method-specific median SOM-to-reference ARI values. Each requested reference method must have an evaluable result; pooled comparisons are not used for this gate.
- min_cross_model_methods
Optional minimum number of reference methods represented in the comparison.
- min_success_rate
Optional minimum model-fit success rate.